Hands On

PIMBA - A PIpeline for MetaBarcoding Analysis

PIMBA allows the use of customized databases, as well as other reference databases.

How to cite?

The peer-reviewed version of the paper can be found at https://doi.org/10.1007/978-3-030-91814-9_10

OLIVEIRA, R. R. M. et al. PIMBA: A PIpeline for MetaBarcoding Analysis. Advances in Bioinformatics and Computational Biology. 1ed. Switzerland: Springer, 2021, v. 13063, p. 106–116, 2021.

OLIVEIRA, RENATO RENISON MOREIRA; SILVA, R. L. ; NUNES, GISELE LOPES ; OLIVEIRA, GUILHERME .PIMBA: a PIpeline for MetaBarcoding Analysis. In: Stadler P.F., Walter M.E.M.T., Hernandez-Rosales M., Brigido M.M.. (Org.).Advances in Bioinformatics and Computational Biology. 1ed. Switzerland: Springer, 2021, v. 13063, p. 106-116

How to install?

To run PIMBA, you just need to have docker installed in your operational system.

sudo apt-get install docker.io

And that’s all! Now you can run PIMBA on your data!